Thank you so much for all answers!
I think I’ve been able to solve the problem. I opened up the MIDI box to see if the internal switches were set to Chase Bliss (TRS) or Empress pedals (TR). The manual say that the “box comes set from the factory to control Chase Bliss devices”, so I’ve never cared to look, but if for some reason, they weren’t, that would explain a lot.
Now, the switch is something called a “jumper” that coveres two pins. But I don’t understand, should the jumpers be connected to the two pins closest to CBA or is it the naked pin that shouyld be close to CBA?. The manual doesn’t tell.
Just to try, I did swich one of them (from they way they are shown in the image to the other way, so that the jumper instead covers the two pins closest to “CBA”), and connected that port to my pedal, and voila, now clock works as it should!.
So, I assume the jumpers really are suppose to cover the pins close to (in my case) CBA, and that they were set on Empress by mistake (I bought the box new, and have never opened it before). If you know that this indeed is so, please let me know!
And now I am also able to control the pedals via the DT encoders! It worked!!! A new world of possiblities!
There is still a weird thing that happens though, when I plug or unplug too slowly, that one of the stomp switches functionalities “turns on”. It’s no biggie though, it’s just to turn it off again. And I also can’t seem to make the DT encoder control the Thermae yet (even though I’ve restarted it in MIDI-listening mode many times), but i’ll probably work it out eventually.
So anyway, a HUGE thank you to everyone who came with suggestions! That list of MIDI settings from @Tchu is especially helpful!