In the first example the bottom does look to be clipping a bit more to my eye than the top also. EQ1 boosting the most content it is harder to say if the other EQs aren’t acting under the same principle aswell, them being more subtle based on the range boosted? I would be curious if you crank the sample level to 127 on the sine to see if the others start to clip and if you can start to see a difference in symmetry. Also would be curious if the results might differ on a non wavetable sine? There very well could be something up with EQ1 but it could be the built in sine.
Just took the time to count pixels on the factory sine and the bottom wave has 12 at the lowest point while the top has 10, maybe we are just seeing an exaggeration of this? Pretty sure the factory sine is not mathematically perfect.