Sorry, sometimes trying to explain the OT can lead to more confusion …
The pitches aren’t being saved in different ways, pitches for certain trigs on the sequencer are saved as a parameter lock on pitch, the pitch is “locked” to that trig on whatever step its on.
When you live record in chromatic mode, the machine enters these “locks” on pitch for you.
The manual way without live recording is to put a trig on the sequencer, hold it down, and change the pitch knob value, you will see the pitch knob value become grey which means you locked it…
If a pitch is not locked, the pitch will be where the knob is set…
This is the same for all parameters, the knob sets the value for any trigs that don’t have locks on that parameter. Locks override where the knob is set…
There is no difference between live recording and entering trigs on the sequencer besides the fact that live recording enters parameter locks for you, instead of manually doing it as said above…
After a while this all makes sense a lot more, it’s just confusing at first and it becomes much easier once you get it…
My next experiments are going to involve custom lfo’s on pitch of audio loops, with values calculated to play a scale, and something to do with looping midi from the midi sequencer back into the OT, and using midi features to automate more stuff…