A few ideas:
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Don’t put any trigs on the track, and plug the OT’s MIDI output back into its input. Set the output channel of one of your MIDI tracks to the input channel you’re targeting. Now stick your trigs on the MIDI track, not the audio track. Muting the MIDI channel will mute the notes of your target channel. Be really careful about your MIDI settings, basically you don’t want anything sending MIDI unless you explicitly tell it to.
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You could trigger the track as Plays Free. Of course then you have to set up your sequence such that it will actually make sense play it from the beginning, at the point in the sequence that you trigger it. So if you start it on the 3rd beat of the master pattern, you have to set up the track’s pattern as though it were starting from beat 3.
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Not sure if this will even work (heh) but you might try holding the track key and pressing “stop” twice (or is it three times?). I’m not even sure what this will do but it might do what you want.
Sorry, kind of a wacky post. Spaghetti, meet wall.
(EDIT: clarity)