i had this exact same issue. it started with subtle issues like not being able to send program changes for a bit, but earlier today i booted the OT up and noticed i was having an issue where i couldn’t recall patches on other gear from the OT (yes yes, i reloaded my part first). so i reloaded my project since i’m good about saving parts/projects before shutting down, and once reloaded a chunk of patterns were missing.
anyway, i did some investigating and noticed all the logs i had on the CF card had to do with path issues (weird paths too of folders i had never heard of; mIO ?). i resolved all those path issues by finding the correct sample and associating it via the flex/static menus. once i did that, all my issues went away.
everyone keeps talking about how this issue infects the set. so i’m not really sure what to do. i’m at the point where i think i should just reformat and reconfigure it from scratch.