Sounds like the same problems I’ve been dealing with in the hardware realm although I’ve tried using a sequentix sequencer, MPC, DSI evolver sequencer and not the OT. Since this is my main workflow I’m a little discouraged.
In Live, Logic, or PT it seems to work ok. As for the ipad app, I run it via wifi into my DAW so I can merge it with a synth to trigger notes. The merged signal goes out to the therapsid via my usb-midi interface. Not exactly ideal as I’d like to be able to connect the ipad directly via CCK or other means and fully control it without a computer involved.